functional-connectivity 0.1.3

Description:

functionalconnectivity 0.1.3

functional-connectivity implements a set of tools to detect and sense changes in a functional network from spike counts
This is the software repository behind the paper:

Tzu-Chi Yen and Yi-Yun Ho, Mapping functional neuronal networks to behavioral states, in preparation (2024).

Read it on: arXiv.

For full documentation, please visit this site.
For general Q&A, ideas, or other things, please visit Discussions.
For software-related bugs, issues, or suggestions, please use Issues.

Installation
functional-connectivity is available on PyPI:
pip install functional-connectivity

The dependencies needed to interact with Dandi are not installed by default. You will need to run:

pip install --ignore-installed --no-binary=h5py h5py scipy numba

Development
Remember that ./docs contains the documentation of this library.
You would need AWS credentials to be able to execute ./docs/deploy.sh.
Acknowledgement
The functional-connectivity library is supported by The Kavli Foundation.
TCY wants to thank Rebecca Morrison (@rebeccaem) and Stephen Becker (@stephenbeckr) for inspirations.
We also want to thank the authors in these software implementations:

cvxgrp/strat_models
GalSha/GLASSO_Framework: arXiv (2023)
tpetaja1/tvgl: KDD (2017), time-varying GGM using ADMM and Python 2.7.

License
functional-connectivity is open-source and licensed under the GNU Lesser General Public License v3.0.